It would seem that all of the repacks I've tried so far that uses the new version 7 of the CorePack Installer (CPI) has an error in the installer script were the Start Menu Shortcut & Desktop Shortcut settings are mixed up. What I mean is that If you set it to just create a desktop shortcut for example it will instead create a start menu shortcut and no desktop shortcut, and if you do the same but instead set it to create just a start menu shortcut, it creates a desktop shortcut and no start menu shortcut. It's a minor issue but an issue nonetheless.
For reference, the installer I'm talking about looks like this: